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N-terminal expression tag remainder of human carbonic anhydrase II covalently modified by fragment

Analyse N-terminal expression tag remainder of human carbonic anhydrase II covalently… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6SAC
Type
protein
Length
265 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Carbonic anhydrase 2
EC
4.2.1.1
UniProt
P00918
Ligands
BE7, 47J, NA, ZN, HG
Pockets
2 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 14% helix, 29% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACarbonic anhydrase 2 (EC 4.2.1.1)protein26514% helix, 29% strandP00918

Ligands and binding sites

  • BE7 · (4-carboxyphenyl)(chloro)mercury · ligand · chains A
  • 47J · 1-(1,3-dimethyl-1H-pyrazol-5-yl)methanamine · ligand · chains A
  • NA · Sodium ion · metal · 2 copies · chains A
  • ZN · Zinc ion · metal · chains A
  • HG · Mercury (II) ion · metal · chains A
  • PG4 · Tetraethylene glycol · additive · 2 copies · chains A
  • DMS · Dimethyl sulfoxide · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
1960.510.8222empty
21550.430.7424empty

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

  • 6SAC · N-terminal expression tag remainder of human Carbonic Anhydrase II covalently modified by… · the same entry in another collection · chain A against A, TM-score 1.00
  • P00918 · AlphaFold monomer V2.0 prediction for carbonic anhydrase 2 (P00918) · a predicted model of the same protein · chain A against A, TM-score 0.97

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