Research workbench
Structure of the PFEMP1 IT4VAR13 dblbeta domain bound to icam-1
Analyse Structure of the PFEMP1 IT4VAR13 dblbeta domain bound to icam-1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6S8U
- Type
- protein
- Length
- 614 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- E0A3B3, P05362
- Ligands
- NAG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 428 | — | E0A3B3 |
| B | — | protein | 186 | — | P05362 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6S8U · Structure of the PfEMP1 IT4var13 DBLbeta domain bound to ICAM-1 · the same entry in another collection · chain A against A, TM-score 1.00
- P05362 · AlphaFold monomer V2.0 prediction for intercellular adhesion molecule 1 (P05362) · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E0A3B3
- Every structure of UniProt P05362
- Elsewhere: RCSB PDB 6S8U · PDBe 6S8U · UniProt E0A3B3 · UniProt P05362
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