Research workbench
Cfucosylated second generation peptide dendrimer SBD8 bound to fucose binding lectin lecb (pa-iil) from pseudomonas aeruginosa at 1.43 ångström resolution
Analyse Cfucosylated second generation peptide dendrimer SBD8 bound to fucose binding… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6S5S
- Type
- protein
- Length
- 132 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A069Q9V4
- Ligands
- ZDC, CA, NH2
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 114 | — | A0A069Q9V4 |
| B | — | protein | 6 | — | — |
| C, E | — | protein | 3 | — | — |
| D | — | protein | 6 | — | — |
Ligands and binding sites
- ZDC · 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid · sugar · chains A, C
- CA · Calcium ion · metal · 2 copies · chains A
- NH2 · Amino group · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6S5S · Cfucosylated second generation peptide dendrimer SBD8 bound to Fucose binding Lectin LecB… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A069Q9V4
- Elsewhere: RCSB PDB 6S5S · PDBe 6S5S · UniProt A0A069Q9V4
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