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Structure of the A2A adenosine receptor determined at swissfel using native-sad at 4.57 kev from all available diffraction patterns

Analyse Structure of the A2A adenosine receptor determined at swissfel using native-sad… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6S0L
Type
protein
Length
388 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
A2A adenosine receptor
Ligands
OLA, CLR, OLB, ZMA
Pockets
6 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 84% helix, 2% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AA2A adenosine receptorprotein38884% helix, 2% strand—

Ligands and binding sites

  • OLA · Oleic acid · ligand · 7 copies · chains A
  • CLR · Cholesterol · ligand · 3 copies · chains A
  • OLB · (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · ligand · 2 copies · chains A
  • ZMA · 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-A][1,3, 5]triazin-5-yl)amino]ethyl}phenol · ligand · chains A
  • OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12840.760.8835ZMA
22340.670.8428empty
31120.380.7421empty
4670.350.7615OLA
5600.300.7414empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

  • 6S0L · Structure of the A2A adenosine receptor determined at SwissFEL using native-SAD at 4.57… · the same entry in another collection · chain A against A, TM-score 1.00

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