Research workbench
Structure of the A2A adenosine receptor determined at swissfel using native-sad at 4.57 kev from all available diffraction patterns
Analyse Structure of the A2A adenosine receptor determined at swissfel using native-sad… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6S0L
- Type
- protein
- Length
- 388 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- A2A adenosine receptor
- Ligands
- OLA, CLR, OLB, ZMA
- Pockets
- 6 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 84% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | A2A adenosine receptor | protein | 388 | 84% helix, 2% strand | — |
Ligands and binding sites
- OLA · Oleic acid · ligand · 7 copies · chains A
- CLR · Cholesterol · ligand · 3 copies · chains A
- OLB · (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · ligand · 2 copies · chains A
- ZMA · 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-A][1,3, 5]triazin-5-yl)amino]ethyl}phenol · ligand · chains A
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 284 | 0.76 | 0.88 | 35 | ZMA |
| 2 | 234 | 0.67 | 0.84 | 28 | empty |
| 3 | 112 | 0.38 | 0.74 | 21 | empty |
| 4 | 67 | 0.35 | 0.76 | 15 | OLA |
| 5 | 60 | 0.30 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 6S0L · Structure of the A2A adenosine receptor determined at SwissFEL using native-SAD at 4.57… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6S0L · PDBe 6S0L
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