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Structure of carbohydrate recognition domain with glcnac bound

Analyse Structure of carbohydrate recognition domain with glcnac bound in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6RYM
Type: protein
Length: 122 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Conglutinin
UniProt: P23805
Ligands: NDG, NAG, CA

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Conglutinin	protein	122	20% helix, 25% strand	P23805

Ligands and binding sites

NDG · 2-acetamido-2-deoxy-alpha-D-glucopyranose · sugar · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
CA · Calcium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

6RYM · Structure of carbohydrate recognition domain with GlcNAc bound · the same entry in another collection · chain A against A, TM-score 1.00
P23805 · AlphaFold monomer V2.0 prediction for conglutinin (P23805) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P23805
Elsewhere: RCSB PDB 6RYM · PDBe 6RYM · UniProt P23805

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