Research workbench

Crystal structure of DFG5 from chaetomium thermophilum

Analyse Crystal structure of DFG5 from chaetomium thermophilum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6RY0
Type: protein
Length: 410 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mannan endo-1,6-alpha-mannosidase
EC: 3.2.1.101
UniProt: G0S3F2
Ligands: CA
Pockets: 3 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mannan endo-1,6-alpha-mannosidase (EC 3.2.1.101)	protein	410	54% helix, 4% strand	G0S3F2

Ligands and binding sites

CA · Calcium ion · metal · chains A
DMS · Dimethyl sulfoxide · additive · chains A
PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	150	0.49	0.78	21	empty
2	106	0.47	0.80	26	empty
3	58	0.40	0.81	15	empty

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

6RY0 · Crystal structure of Dfg5 from Chaetomium thermophilum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G0S3F2
Elsewhere: RCSB PDB 6RY0 · PDBe 6RY0 · UniProt G0S3F2

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.