Research workbench
The crystal structure of human phosphoglucose isomerase complexed with 5-phosphoarabinonate
Analyse The crystal structure of human phosphoglucose isomerase complexed with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1NUH
- Type
- protein
- Length
- 555 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucose phosphate isomerase
- EC
- 5.3.1.9
- UniProt
- P06744
- Ligands
- PA5, SO4
- Pockets
- 4 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucose phosphate isomerase (EC 5.3.1.9) | protein | 555 | 55% helix, 13% strand | P06744 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 226 | 0.62 | 0.82 | 40 | PA5 |
| 2 | 58 | 0.52 | 0.87 | 15 | empty |
| 3 | 125 | 0.43 | 0.76 | 20 | empty |
| 4 | 56 | 0.27 | 0.73 | 14 | empty |
Compared structures
- 1NUH · The crystal structure of human phosphoglucose isomerase complexed with… · the same entry in another collection · chain A against A, TM-score 1.00
- P06744 · AlphaFold monomer V2.0 prediction for glucose-6-phosphate isomerase (P06744) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06744
- Elsewhere: RCSB PDB 1NUH · PDBe 1NUH · UniProt P06744
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