Research workbench
Crystal structure of human kallikrein 6 in complex with GSK3205388B
Analyse Crystal structure of human kallikrein 6 in complex with GSK3205388B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6QHA
- Type
- protein
- Length
- 443 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Kallikrein-6
- EC
- 3.4.21.-
- UniProt
- Q92876
- Ligands
- J2Q, UNX
- Pockets
- 4 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Kallikrein-6 (EC 3.4.21.-) | protein | 222 | 10% helix, 38% strand | Q92876 |
| B | Kallikrein-6 (EC 3.4.21.-) | protein | 221 | 10% helix, 38% strand | Q92876 |
Ligands and binding sites
- J2Q · ~{N}-(4-carbamimidoylphenyl)-3-ethoxy-2-oxidanyl-benzamide · ligand · 2 copies · chains A, B
- UNX · Unknown atom or ion · ion · 3 copies · chains A, B
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 507 | 0.69 | 0.79 | 58 | J2Q |
| 2 | 58 | 0.55 | 0.89 | 21 | empty |
| 3 | 67 | 0.34 | 0.76 | 16 | J2Q |
| 4 | 53 | 0.32 | 0.77 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 466 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92876
- Elsewhere: RCSB PDB 6QHA · PDBe 6QHA · UniProt Q92876
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