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Complex of arginase 2 with example 49

Analyse Complex of arginase 2 with example 49 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6Q39
Type
protein
Length
918 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P78540
Ligands
BEN, HDQ, MN

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B, C—protein306—P78540

Ligands and binding sites

  • BEN · Benzamidine · ligand · 3 copies · chains A, B, C
  • HDQ · 3-[(3~{S},4~{R})-4-azanyl-4-carboxy-1-[[(2~{S})-piperidin-2-yl]methyl]pyrrolidin-3-yl]propyl-tris(oxidanyl)boranuide · ligand · 3 copies · chains A, B, C
  • MN · Manganese (II) ion · metal · 6 copies · chains A, B, C
  • BME · Beta-mercaptoethanol · additive · 3 copies · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6Q39 · Complex of Arginase 2 with Example 49 · the same entry in another collection · chain A against A, TM-score 1.00
  • P78540 · AlphaFold monomer V2.0 prediction for arginase-2, mitochondrial (P78540) · a predicted model of the same protein · chain C against A, TM-score 1.00

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