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Crystal structure of the carbohydrate recognition domain of the human macrophage galactose C-type lectin bound to galnac

Analyse Crystal structure of the carbohydrate recognition domain of the human… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6PY1
Type: protein
Length: 130 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: C-type lectin domain family 10 member a
UniProt: Q8IUN9
Ligands: A2G, CA, CL

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	C-type lectin domain family 10 member a	protein	130	15% helix, 28% strand	Q8IUN9

Ligands and binding sites

A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · chains A
CA · Calcium ion · metal · 4 copies · chains A
CL · Chloride ion · ion · 5 copies · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

6PY1 · Crystal Structure of the Carbohydrate Recognition Domain of the Human Macrophage… · the same entry in another collection · chain A against A, TM-score 1.00
Q8IUN9 · AlphaFold monomer V2.0 prediction for C-type lectin domain family 10 member a (Q8IUN9) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8IUN9
Elsewhere: RCSB PDB 6PY1 · PDBe 6PY1 · UniProt Q8IUN9

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