Research workbench
The HIV-1 envelope glycoprotein clone BG505 SOSIP.664 in complex with three copies of the bovine broadly neutralizing antibody, nc-COW1, fragment antigen binding domain
Analyse The HIV-1 envelope glycoprotein clone BG505 SOSIP.664 in complex with three… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6PW6
- Type
- protein
- Length
- 1,842 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E | — | protein | 439 | — | Q2N0S6 |
| B, D, F | — | protein | 126 | — | Q2N0S6 |
| G, H, I | — | protein | 49 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 96 copies · chains A, B, C, D, E, F
- BMA · beta-D-mannopyranose · sugar · 6 copies · chains G, H, I
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains G, H, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PW6 · The HIV-1 Envelope Glycoprotein Clone BG505 SOSIP.664 in Complex with Three Copies of the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 6PW6 · PDBe 6PW6 · UniProt Q2N0S6
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