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Structure of the self-association domain of the chromatin looping factor LDB1

Analyse Structure of the self-association domain of the chromatin looping factor LDB1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6PTL
Type: protein
Length: 142 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lim domain-binding protein 1
UniProt: P70662
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lim domain-binding protein 1	protein	142	26% helix, 47% strand	P70662

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	128	0.41	0.75	20	empty

Compared structures

6PTL · Structure of the self-association domain of the chromatin looping factor LDB1 · the same entry in another collection · chain A against A, TM-score 1.00
P70662 · AlphaFold monomer V2.0 prediction for lim domain-binding protein 1 (P70662) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P70662
Elsewhere: RCSB PDB 6PTL · PDBe 6PTL · UniProt P70662

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