Research workbench
Xfel MT1R structure by ligand exchange from agomelatine to 2- phenylmelatonin.
Analyse Xfel MT1R structure by ligand exchange from agomelatine to 2- phenylmelatonin. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6PS8
- Type
- protein
- Length
- 486 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P48039, Q9V2J8
- Ligands
- JEY
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 486 | — | P48039, Q9V2J8 |
Ligands and binding sites
- JEY · N-[2-(5-methoxy-2-phenyl-1H-indol-3-yl)ethyl]acetamide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PS8 · XFEL MT1R structure by ligand exchange from agomelatine to 2-phenylmelatonin. · the same entry in another collection · chain A against A, TM-score 1.00
- P48039 · AlphaFold monomer V2.0 prediction for melatonin receptor type 1A (P48039) · a predicted model of the same protein · chain A against A, TM-score 0.59
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P48039
- Every structure of UniProt Q9V2J8
- Elsewhere: RCSB PDB 6PS8 · PDBe 6PS8 · UniProt P48039 · UniProt Q9V2J8
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