Research workbench

Hypothetical protein from pyrococcus furiosus pfu-1218608

Analyse Hypothetical protein from pyrococcus furiosus pfu-1218608 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1NNW
Type: protein
Length: 502 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein
UniProt: Q8U1C6
Ligands: PT, NA
Pockets: 5 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Hypothetical protein	protein	251	38% helix, 23% strand	Q8U1C6

Ligands and binding sites

PT · Platinum (II) ion · metal · 4 copies · chains A, B
NA · Sodium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	191	0.49	0.76	31	empty
2	163	0.47	0.76	23	empty
3	105	0.42	0.77	23	empty
4	80	0.38	0.77	26	empty
5	83	0.35	0.75	13	empty

Interfaces

1 interface between chains.

A–B · 970 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

1NNW · hypothetical protein from Pyrococcus furiosus Pfu-1218608 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8U1C6
Elsewhere: RCSB PDB 1NNW · PDBe 1NNW · UniProt Q8U1C6

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