Research workbench
Structure of CLPC1-ntd in complex with ecumicin
Analyse Structure of CLPC1-ntd in complex with ecumicin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6PBS
- Type
- protein
- Length
- 2,039 residues
- Chains
- 36
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P9WPC9
- Ligands
- O7D
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, M | — | protein | 144 | — | P9WPC9 |
| I, K, T | — | protein | 146 | — | P9WPC9 |
| C, B | — | protein | 145 | — | P9WPC9 |
| W, Y, e, G, O | — | protein | 147 | — | P9WPC9 |
| D, E, F, H, J, L, N, P, Q, R, S, U, V, X, Z, a, b, c, d, f, g, h, i, j | — | protein | 12 | — | — |
Ligands and binding sites
- O7D · 4-methoxy-N-methyl-L-tryptophan · ligand · 24 copies · chains A, D, E, B, F, H, C, J, L, G, N, P, I, Q, R, K, S, U, M, V, X, O, Z, a, T, b, c, W, d, f, Y, g, h, e, i, j
- ACT · Acetate ion · additive · 20 copies · chains A, I, C, W, Y, e, h, j, B, G, K, M, O, T
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PBS · Structure of ClpC1-NTD in complex with Ecumicin · the same entry in another collection · chain M against M, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WPC9
- Elsewhere: RCSB PDB 6PBS · PDBe 6PBS · UniProt P9WPC9
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