Research workbench
X-ray structure of polypeptide deformylase with a piperazic acid
Analyse X-ray structure of polypeptide deformylase with a piperazic acid in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OW7
- Type
- protein
- Length
- 387 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q939R9
- Ligands
- N9Y, NI, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| P | — | protein | 196 | — | Q939R9 |
| Q | — | protein | 191 | — | Q939R9 |
Ligands and binding sites
- N9Y · (3S)-2-{(2R)-2-(cyclopentylmethyl)-3-[formyl(hydroxy) amino]propanoyl}-N-(pyridin-2-yl)hexahydropyridazine-3-carboxamide · ligand · 2 copies · chains P, Q
- NI · Nickel (II) ion · metal · 2 copies · chains P, Q
- SO4 · Sulfate ion · ion · 2 copies · chains P, Q
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6OW7 · X-ray Structure of Polypeptide Deformylase with a Piperazic Acid · the same entry in another collection · chain P against P, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q939R9
- Elsewhere: RCSB PDB 6OW7 · PDBe 6OW7 · UniProt Q939R9
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