Research workbench
Enterococcal surface protein, partial N-terminal region
Analyse Enterococcal surface protein, partial N-terminal region in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ORI
- Type
- protein
- Length
- 381 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- EF0056
- UniProt
- Q9Z4N7
- Ligands
- CA
- Pockets
- 5 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | EF0056 | protein | 381 | 16% helix, 39% strand | Q9Z4N7 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 274 | 0.70 | 0.85 | 39 | empty |
| 2 | 359 | 0.62 | 0.78 | 44 | empty |
| 3 | 82 | 0.39 | 0.78 | 16 | empty |
| 4 | 76 | 0.32 | 0.74 | 15 | empty |
| 5 | 54 | 0.28 | 0.74 | 11 | empty |
Compared structures
- 6ORI · Enterococcal surface protein, partial N-terminal region · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Z4N7
- Elsewhere: RCSB PDB 6ORI · PDBe 6ORI · UniProt Q9Z4N7
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