Research workbench
Structure of whb in complex with ubiquitin variant
Analyse Structure of whb in complex with ubiquitin variant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OB1
- Type
- protein
- Length
- 240 residues
- Chains
- 3
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin; Anaphase-promoting complex subunit 2
- UniProt
- Q9UJX6
- Pockets
- 3 · best druggability 0.45
Structure
solution nmr · 3 distinct chains · 33% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin | protein | 75 | 20% helix, 43% strand | — |
| B | Ubiquitin | protein | 75 | 20% helix, 44% strand | — |
| C | Anaphase-promoting complex subunit 2 | protein | 90 | 53% helix, 6% strand | Q9UJX6 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 135 | 0.45 | 0.76 | 20 | empty |
| 2 | 61 | 0.39 | 0.80 | 13 | empty |
| 3 | 65 | 0.33 | 0.76 | 14 | empty |
Interfaces
3 interfaces between chains.
- A–B · 2076 Ų buried · 55 hydrogen bonds · protein-protein
- A–C · 662 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 186 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UJX6
- Elsewhere: RCSB PDB 6OB1 · PDBe 6OB1 · UniProt Q9UJX6
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