Research workbench
Crystal structure of SEC4P, a rab family GTPase from candida albicans
Analyse Crystal structure of SEC4P, a rab family GTPase from candida albicans in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6O62
- Type
- protein
- Length
- 169 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RAS-related protein SEC4
- UniProt
- P0CY31
- Ligands
- GDP
- Pockets
- 1 · best druggability 0.26
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RAS-related protein SEC4 | protein | 169 | 33% helix, 27% strand | P0CY31 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 54 | 0.26 | 0.73 | 17 | empty |
Compared structures
- 6O62 · Crystal structure of Sec4p, a Rab family GTPase from Candida albicans · the same entry in another collection · chain A against A, TM-score 1.00
- P0CY31 · AlphaFold monomer V2.0 prediction for RAS-related protein SEC4 (P0CY31) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CY31
- Elsewhere: RCSB PDB 6O62 · PDBe 6O62 · UniProt P0CY31
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