Research workbench
Structure of ALDH7A1 mutant A171V complexed with NAD
Analyse Structure of ALDH7A1 mutant A171V complexed with NAD in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6O4H
- Type
- protein
- Length
- 3,977 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-aminoadipic semialdehyde dehydrogenase
- EC
- 1.2.1.31, 1.2.1.3, 1.2.1.8
- UniProt
- P49419
- Ligands
- NAD
- Pockets
- 20 · best druggability 0.86
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, F, G, H | Alpha-aminoadipic semialdehyde dehydrogenase (EC 1.2.1.31, 1.2.1.3, 1.2.1.8) | protein | 497 | 43% helix, 22% strand | P49419 |
| E | Alpha-aminoadipic semialdehyde dehydrogenase (EC 1.2.1.31, 1.2.1.3, 1.2.1.8) | protein | 498 | 42% helix, 22% strand | P49419 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 8 copies · chains A, B, C, D, E, F, G, H
- EDO · 1,2-ethanediol · additive · 2 copies · chains B, E, A, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1130 | 0.86 | 0.87 | 85 | empty |
| 2 | 1125 | 0.86 | 0.87 | 83 | empty |
| 3 | 1174 | 0.86 | 0.87 | 86 | empty |
| 4 | 1182 | 0.86 | 0.87 | 67 | empty |
| 5 | 1135 | 0.85 | 0.87 | 87 | empty |
Interfaces
16 interfaces between chains.
- E–F · 2836 Ų buried · 56 hydrogen bonds · protein-protein
- G–H · 2824 Ų buried · 56 hydrogen bonds · protein-protein
- A–B · 2786 Ų buried · 53 hydrogen bonds · protein-protein
- C–D · 2730 Ų buried · 50 hydrogen bonds · protein-protein
- A–C · 978 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6O4H · Structure of ALDH7A1 mutant A171V complexed with NAD · the same entry in another collection · chain H against H, TM-score 1.00
- P49419 · AlphaFold monomer V2.0 prediction for alpha-aminoadipic semialdehyde dehydrogenase… · a predicted model of the same protein · chain H against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49419
- Elsewhere: RCSB PDB 6O4H · PDBe 6O4H · UniProt P49419
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