Research workbench
Crystal structure of computationally designed protein XAA_GVDQ with calcium
Analyse Crystal structure of computationally designed protein XAA_GVDQ with calcium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6NY8
- Type
- protein
- Length
- 272 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Design construct XAA_GVDQ
- Ligands
- CA, CL
Structure
x-ray diffraction · 2 distinct chains · 94% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Design construct XAA_GVDQ | protein | 90 | 94% helix, 0% strand | — |
| B, C | Design construct XAA_GVDQ | protein | 91 | 93% helix, 0% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- A–B · 1385 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 1367 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 1310 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6NY8 · Crystal structure of computationally designed protein XAA_GVDQ with calcium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6NY8 · PDBe 6NY8
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