Research workbench
Crystal structure desulfovibrio desulfuricans nickel-substituted rubredoxin
Analyse Crystal structure desulfovibrio desulfuricans nickel-substituted rubredoxin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6NW0
- Type
- protein
- Length
- 90 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rubredoxin
- UniProt
- A0A1K1LMQ8
- Ligands
- NI
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Rubredoxin | protein | 45 | 20% helix, 22% strand | A0A1K1LMQ8 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 317 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6NW0 · Crystal Structure Desulfovibrio desulfuricans Nickel-Substituted Rubredoxin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1K1LMQ8
- Elsewhere: RCSB PDB 6NW0 · PDBe 6NW0 · UniProt A0A1K1LMQ8
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