Research workbench
Human parainfluenza virus type 3 fusion protein N-terminal heptad repeat DOMAIN+VIQKI
Analyse Human parainfluenza virus type 3 fusion protein N-terminal heptad repeat… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6NRO
- Type
- protein
- Length
- 250 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Human parainfluenza virus type 3 fusion glycoprotein N- terminal heptad repeat domain…
- UniProt
- A0A1V0E102, A0A023PHT3
- Ligands
- CA, NH2
Structure
x-ray diffraction · 3 distinct chains · 83% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E, C | Human parainfluenza virus type 3 fusion glycoprotein N- terminal heptad repeat domain | protein | 49 | 94% helix, 0% strand | A0A1V0E102 |
| D, F | Human parainfluenza virus type 3 fusion glycoprotein C- terminal heptad repeat domain | protein | 34 | 76% helix, 0% strand | A0A023PHT3 |
| B | Human parainfluenza virus type 3 fusion glycoprotein C- terminal heptad repeat domain | protein | 35 | 74% helix, 0% strand | A0A023PHT3 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
- NH2 · Amino group · ion · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
9 interfaces between chains.
- A–F · 973 Ų buried · 9 hydrogen bonds · protein-protein
- E–D · 961 Ų buried · 8 hydrogen bonds · protein-protein
- C–B · 950 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 862 Ų buried · 14 hydrogen bonds · protein-protein
- C–D · 852 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 6NRO · Human parainfluenza virus type 3 fusion protein N-terminal heptad repeat domain+VIQKI · the same entry in another collection · chain F against F, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1V0E102
- Every structure of UniProt A0A023PHT3
- Elsewhere: RCSB PDB 6NRO · PDBe 6NRO · UniProt A0A1V0E102 · UniProt A0A023PHT3
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