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Crystal structure of the molybdate transporter periplasmic protein moda from yersinia pestis

Analyse Crystal structure of the molybdate transporter periplasmic protein moda from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6NIO
Type: protein
Length: 231 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Molybdate ABC transporter substrate-binding protein
UniProt: A0A2S9PEQ7
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Molybdate ABC transporter substrate-binding protein	protein	231	43% helix, 26% strand	A0A2S9PEQ7

Ligands and binding sites

NHE · 2-[N-cyclohexylamino]ethane sulfonic acid · additive · chains A
ACY · Acetic acid · additive · chains A
FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	201	0.52	0.77	27	FMT

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

6NIO · Crystal Structure of the Molybdate Transporter Periplasmic Protein ModA from Yersinia… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2S9PEQ7
Elsewhere: RCSB PDB 6NIO · PDBe 6NIO · UniProt A0A2S9PEQ7

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