Research workbench
Methylmalonyl-CoA decarboxylase in complex with 2-sulfonate-propionyl- CoA
Analyse Methylmalonyl-CoA decarboxylase in complex with 2-sulfonate-propionyl- CoA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6N95
- Type
- protein
- Length
- 1,560 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P52045
- Ligands
- YXS, YXR, NI, K
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | — | protein | 260 | — | P52045 |
Ligands and binding sites
- YXS · (2S)-sulfonatepropionyl-CoA · ligand · 6 copies · chains A, B, C, D, E, F
- YXR · (2R)-sulfonatepropionyl-CoA · ligand · 6 copies · chains A, B, C, D, E, F
- NI · Nickel (II) ion · metal · 2 copies · chains A, B, C, D, E, F
- K · Potassium ion · metal · 2 copies · chains C
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains C, F
- PG4 · Tetraethylene glycol · additive · chains C
- PGE · Triethylene glycol · additive · chains F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6N95 · Methylmalonyl-CoA decarboxylase in complex with 2-sulfonate-propionyl-CoA · the same entry in another collection · chain C against C, TM-score 1.00
- P52045 · AlphaFold monomer V2.0 prediction for methylmalonyl-CoA decarboxylase (P52045) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52045
- Elsewhere: RCSB PDB 6N95 · PDBe 6N95 · UniProt P52045
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.