Research workbench
Mbp-fusion protein of transducin-alpha residues 327-350
Analyse Mbp-fusion protein of transducin-alpha residues 327-350 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6N84
- Type
- protein
- Length
- 392 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- G alpha T C terminal fragment fused to maltose binding protein
- UniProt
- P0AEY0, P19087
- Ligands
- GLC, SO4
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | G alpha T C terminal fragment fused to maltose binding protein | protein | 392 | 45% helix, 20% strand | P0AEY0, P19087 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
- SO4 · Sulfate ion · ion · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 257 | 0.69 | 0.84 | 28 | GLC, SO4 |
| 2 | 64 | 0.51 | 0.86 | 19 | empty |
| 3 | 52 | 0.26 | 0.73 | 15 | empty |
Compared structures
- 6N84 · MBP-fusion protein of transducin-alpha residues 327-350 · the same entry in another collection · chain A against A, TM-score 1.00
- P19087 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein G(T) subunit… · a predicted model of the same protein · chain A against A, TM-score 0.25
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEY0
- Every structure of UniProt P19087
- Elsewhere: RCSB PDB 6N84 · PDBe 6N84 · UniProt P0AEY0 · UniProt P19087
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