Research workbench
Sega-sym, conformation of tdp-43 low complexity domain segment a sym
Analyse Sega-sym, conformation of tdp-43 low complexity domain segment a sym in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6N37
- Type
- protein
- Length
- 360 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tar DNA-binding protein 43
- UniProt
- Q13148
Structure
electron microscopy · 1 distinct chain · 0% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J | Tar DNA-binding protein 43 | protein | 36 | 0% helix, 47% strand | Q13148 |
Interfaces
30 interfaces between chains.
- A–D · 1543 Ų buried · 42 hydrogen bonds · protein-protein
- E–I · 1533 Ų buried · 38 hydrogen bonds · protein-protein
- B–F · 1531 Ų buried · 38 hydrogen bonds · protein-protein
- D–H · 1523 Ų buried · 38 hydrogen bonds · protein-protein
- C–G · 1523 Ų buried · 38 hydrogen bonds · protein-protein
Compared structures
- 6N37 · SegA-sym, conformation of TDP-43 low complexity domain segment A sym · the same entry in another collection · chain J against J, TM-score 1.00
- Q13148 · AlphaFold monomer V2.0 prediction for tar DNA-binding protein 43 (Q13148) · a predicted model of the same protein · chain A against A, TM-score 0.29
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13148
- Elsewhere: RCSB PDB 6N37 · PDBe 6N37 · UniProt Q13148
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