Research workbench
Structure of the tandem cache domain of pscc
Analyse Structure of the tandem cache domain of pscc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6MNI
- Type
- protein
- Length
- 509 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methyl-accepting chemotaxis protein
- UniProt
- A0A2V0QX35
- Ligands
- PRO, CL
- Pockets
- 4 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methyl-accepting chemotaxis protein | protein | 258 | 37% helix, 31% strand | A0A2V0QX35 |
| B | Methyl-accepting chemotaxis protein | protein | 251 | 35% helix, 29% strand | A0A2V0QX35 |
Ligands and binding sites
- PRO · Proline · ligand · 2 copies · chains A, B
- CL · Chloride ion · ion · chains B
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 213 | 0.57 | 0.79 | 40 | empty |
| 2 | 139 | 0.50 | 0.79 | 20 | empty |
| 3 | 66 | 0.33 | 0.76 | 15 | empty |
| 4 | 51 | 0.27 | 0.74 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1087 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 6MNI · Structure of the tandem CACHE domain of PscC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2V0QX35
- Elsewhere: RCSB PDB 6MNI · PDBe 6MNI · UniProt A0A2V0QX35
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