Research workbench
PA14 sugar-binding domain from rtx adhesin
Analyse PA14 sugar-binding domain from rtx adhesin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6M8M
- Type
- protein
- Length
- 177 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative large adhesion protein (lap) involved in biofilm formation
- UniProt
- H8W6K8
- Ligands
- BGC, CA, NA
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative large adhesion protein (lap) involved in biofilm formation | protein | 177 | 12% helix, 48% strand | H8W6K8 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · chains A
- CA · Calcium ion · metal · 3 copies · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6M8M · PA14 sugar-binding domain from RTX adhesin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H8W6K8
- Elsewhere: RCSB PDB 6M8M · PDBe 6M8M · UniProt H8W6K8
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