Research workbench
A non-his-rich type of chimeric sirohydrochlorin nickelochelatase cfba from M. jannaschii and M. barkeri
Analyse A non-his-rich type of chimeric sirohydrochlorin nickelochelatase cfba from M.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6M2A
- Type
- protein
- Length
- 252 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sirohydrochlorin COBALTOCHELATASE,SIROHYDROCHLORIN COBALTOCHELATASE,SIROHYDROCHLORIN…
- EC
- 4.99.1.3, 4.99.1.11
- UniProt
- Q58380, P61816
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Sirohydrochlorin COBALTOCHELATASE,SIROHYDROCHLORIN COBALTOCHELATASE,SIROHYDROCHLORIN cobaltochelatase (EC 4.99.1.3, 4.99.1.11) | protein | 126 | 37% helix, 23% strand | Q58380, P61816 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 361 | 0.76 | 0.86 | 35 | SO4 |
Interfaces
1 interface between chains.
- A–B · 2077 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 6M2A · A non-His-rich type of chimeric sirohydrochlorin nickelochelatase CfbA from M. jannaschii… · the same entry in another collection · chain A against A, TM-score 1.00
- Q58380 · AlphaFold monomer V2.0 prediction for sirohydrochlorin cobaltochelatase (Q58380) · a predicted model of the same protein · chain B against A, TM-score 0.91
- P61816 · AlphaFold monomer V2.0 prediction for sirohydrochlorin cobaltochelatase (P61816) · a predicted model of the same protein · chain B against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58380
- Every structure of UniProt P61816
- Elsewhere: RCSB PDB 6M2A · PDBe 6M2A · UniProt Q58380 · UniProt P61816
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