Research workbench
Sirohydrochlorin nickelochelatase cfba in complex with CO2+ and formate
Analyse Sirohydrochlorin nickelochelatase cfba in complex with CO2+ and formate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6M29
- Type
- protein
- Length
- 244 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sirohydrochlorin cobaltochelatase
- EC
- 4.99.1.3, 4.99.1.11
- UniProt
- Q58380
- Ligands
- CO
- Pockets
- 2 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Sirohydrochlorin cobaltochelatase (EC 4.99.1.3, 4.99.1.11) | protein | 122 | 36% helix, 20% strand | Q58380 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 382 | 0.77 | 0.86 | 35 | CO, FMT |
| 2 | 50 | 0.27 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 2079 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 6M29 · Sirohydrochlorin nickelochelatase CfbA in complex with Co2+ and formate · the same entry in another collection · chain A against A, TM-score 1.00
- Q58380 · AlphaFold monomer V2.0 prediction for sirohydrochlorin cobaltochelatase (Q58380) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58380
- Elsewhere: RCSB PDB 6M29 · PDBe 6M29 · UniProt Q58380
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