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Sirohydrochlorin nickelochelatase cfba in P41 space group

Analyse Sirohydrochlorin nickelochelatase cfba in P41 space group in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6M25
Type: protein
Length: 242 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sirohydrochlorin cobaltochelatase
EC: 4.99.1.3, 4.99.1.11
UniProt: Q58380
Pockets: 2 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Sirohydrochlorin cobaltochelatase (EC 4.99.1.3, 4.99.1.11)	protein	121	37% helix, 20% strand	Q58380

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	351	0.77	0.87	38	empty
2	54	0.26	0.73	13	empty

Interfaces

1 interface between chains.

A–B · 2064 Å² buried · 16 hydrogen bonds · protein-protein

Compared structures

6M25 · Sirohydrochlorin nickelochelatase CfbA in P41 space group · the same entry in another collection · chain A against A, TM-score 1.00
Q58380 · AlphaFold monomer V2.0 prediction for sirohydrochlorin cobaltochelatase (Q58380) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58380
Elsewhere: RCSB PDB 6M25 · PDBe 6M25 · UniProt Q58380

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