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Comparison of the crystal structure of bacteriophage T4 lysozyme at low, medium, and high ionic strengths

Analyse Comparison of the crystal structure of bacteriophage T4 lysozyme at low… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6LZM
Type: protein
Length: 162 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: T4 lysozyme
EC: 3.2.1.17
UniProt: P00720
Ligands: CL
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 65% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	T4 lysozyme (EC 3.2.1.17)	protein	162	65% helix, 9% strand	P00720

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains A
BME · Beta-mercaptoethanol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	247	0.52	0.75	30	empty

Modifications

Observed in the structure: 2 covalent (additive adduct).

Compared structures

6LZM · Comparison of the crystal structure of bacteriophage T4 lysozyme at low, medium, and high… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00720
Elsewhere: RCSB PDB 6LZM · PDBe 6LZM · UniProt P00720

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