Research workbench
Crystal structure of arabidopsis ARID5 phd finger in complex with H3K4ME3 peptide
Analyse Crystal structure of arabidopsis ARID5 phd finger in complex with H3K4ME3… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6LQE
- Type
- protein
- Length
- 63 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- At-rich interactive domain-containing protein 4; 15-mer peptide from histone H3.2
- UniProt
- Q6NQ79, P59226
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 17% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | At-rich interactive domain-containing protein 4 | protein | 55 | 20% helix, 15% strand | Q6NQ79 |
| P | 15-mer peptide from histone H3.2 | protein | 8 | 0% helix, 50% strand | P59226 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–P · 510 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 modified (methylation).
Compared structures
- 6LQE · Crystal structure of Arabidopsis ARID5 PHD finger in complex with H3K4me3 peptide · the same entry in another collection · chain A against A, TM-score 1.00
- Q6NQ79 · AlphaFold monomer V2.0 prediction for at-rich interactive domain- containing protein 4… · a predicted model of the same protein · chain A against A, TM-score 0.95
- P59226 · AlphaFold monomer V2.0 prediction for histone H3.2 (P59226) · a predicted model of the same protein · chain P against A, TM-score 0.35
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6NQ79
- Every structure of UniProt P59226
- Elsewhere: RCSB PDB 6LQE · PDBe 6LQE · UniProt Q6NQ79 · UniProt P59226
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