Research workbench
Structure antibody D6 in complex with methylated peptide
Analyse Structure antibody D6 in complex with methylated peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6LDY
- Type
- protein
- Length
- 873 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- CA, CL
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 212 | — | — |
| B | — | protein | 216 | — | — |
| C | — | protein | 9 | — | — |
| H | — | protein | 211 | — | — |
| L | — | protein | 215 | — | — |
| M | — | protein | 10 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies
- CL · Chloride ion · ion · 4 copies · chains A, B, H, L
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6LDY · Structure antibody D6 in complex with methylated peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6LDY · PDBe 6LDY
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