Research workbench
Structure of OR51B2 bound FEM1C
Analyse Structure of OR51B2 bound FEM1C in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6LBG
- Type
- protein
- Length
- 759 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein fem-1 homolog C,PEPTIDE from olfactory receptor 51B2
- UniProt
- Q96JP0, Q9Y5P1
- Ligands
- SO4
- Pockets
- 5 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 58% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Protein fem-1 homolog C,PEPTIDE from olfactory receptor 51B2 | protein | 382 | 57% helix, 3% strand | Q96JP0, Q9Y5P1 |
| A | Protein fem-1 homolog C,PEPTIDE from olfactory receptor 51B2 | protein | 377 | 59% helix, 3% strand | Q96JP0, Q9Y5P1 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 6 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 758 | 0.70 | 0.77 | 66 | SO4 |
| 2 | 106 | 0.54 | 0.83 | 23 | empty |
| 3 | 135 | 0.44 | 0.76 | 22 | empty |
| 4 | 79 | 0.35 | 0.76 | 16 | empty |
| 5 | 51 | 0.28 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- B–A · 1226 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6LBG · Structure of OR51B2 bound FEM1C · the same entry in another collection · chain B against B, TM-score 1.00
- Q96JP0 · AlphaFold monomer V2.0 prediction for protein fem-1 homolog C (Q96JP0) · a predicted model of the same protein · chain A against A, TM-score 0.96
- Q9Y5P1 · AlphaFold monomer V2.0 prediction for olfactory receptor 51B2 (Q9Y5P1) · a predicted model of the same protein · chain A against A, TM-score 0.20
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96JP0
- Every structure of UniProt Q9Y5P1
- Elsewhere: RCSB PDB 6LBG · PDBe 6LBG · UniProt Q96JP0 · UniProt Q9Y5P1
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