Research workbench
Crystal structure of CYP97A3 mutant S290D/W300L/S304V in complex with retinal
Analyse Crystal structure of CYP97A3 mutant S290D/W300L/S304V in complex with retinal in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6L8J
- Type
- protein
- Length
- 441 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein lutein deficient 5, chloroplastic
- EC
- 1.14.-.-
- UniProt
- Q93VK5
- Ligands
- HEM, RET
- Pockets
- 3 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein lutein deficient 5, chloroplastic (EC 1.14.-.-) | protein | 441 | 54% helix, 12% strand | Q93VK5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 626 | 0.87 | 0.91 | 73 | HEM, RET |
| 2 | 154 | 0.54 | 0.80 | 28 | empty |
| 3 | 74 | 0.31 | 0.74 | 14 | empty |
Compared structures
- 6L8J · Crystal structure of CYP97A3 mutant S290D/W300L/S304V in complex with retinal · the same entry in another collection · chain A against A, TM-score 1.00
- Q93VK5 · AlphaFold monomer V2.0 prediction for protein lutein deficient 5, chloroplastic (Q93VK5) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93VK5
- Elsewhere: RCSB PDB 6L8J · PDBe 6L8J · UniProt Q93VK5
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