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Crystal structure of udp-sm-SRUGT76G1

Analyse Crystal structure of udp-sm-SRUGT76G1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6KVK
Type: protein
Length: 448 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Udp-glycosyltransferase 76G1
EC: 2.4.1.-
UniProt: Q6VAB4
Ligands: UDP, DX0
Pockets: 2 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Udp-glycosyltransferase 76G1 (EC 2.4.1.-)	protein	448	45% helix, 15% strand	Q6VAB4

Ligands and binding sites

UDP · Uridine-5'-diphosphate · ligand · chains A
DX0 · Steviolmonoside · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	947	0.82	0.84	76	UDP, DX0
2	67	0.30	0.74	15	empty

Compared structures

6KVK · Crystal structure of UDP-Sm-SrUGT76G1 · the same entry in another collection · chain A against A, TM-score 1.00
Q6VAB4 · AlphaFold monomer V2.0 prediction for udp-glycosyltransferase 76G1 (Q6VAB4) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6VAB4
Elsewhere: RCSB PDB 6KVK · PDBe 6KVK · UniProt Q6VAB4

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