Research workbench

Crystal structure of YBX1 csd with RNA

Analyse Crystal structure of YBX1 csd with RNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6KUG
Type: protein + RNA
Length: 77 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nuclease-sensitive element-binding protein 1; RNA (5'-R(P*GP*CP*CP*U)-3')
UniProt: P67809

Structure

x-ray diffraction · 2 distinct chains · 4% helix, 59% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nuclease-sensitive element-binding protein 1	protein	73	4% helix, 59% strand	P67809
B	RNA (5'-R(PGPCPCPU)-3')	rna	4	—	—

Interfaces

1 interface between chains.

A–B · 600 Å² buried · 15 hydrogen bonds · protein-nucleic

Compared structures

6KUG · Crystal structure of YBX1 CSD with RNA · the same entry in another collection · chain A against A, TM-score 1.00
P67809 · AlphaFold monomer V2.0 prediction for Y-box-binding protein 1 (P67809) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P67809
Elsewhere: RCSB PDB 6KUG · PDBe 6KUG · UniProt P67809

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.