UniProt P67809
Y-box-binding protein 1 (P67809)
Y-box-binding protein 1 (UniProt P67809): 11 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P67809
- Protein
- Y-box-binding protein 1
- Experimental structures
- 11
- Predicted models
- 1
- Ligands
- 1
Structures
12 records of P67809 in the MolNFT archive: 11 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5YTS | Crystal structure of YB1 cold-shock domain in complex with UCUUCU | x-ray diffraction | A | SO4 | — |
| 5YTS | Crystal structure of YB1 cold-shock domain in complex with ucuucu | — | — | — | |
| 5YTT | Crystal structure of YB1 cold-shock domain in complex with ucaugu | — | — | — | |
| 5YTV | Crystal structure of YB1 cold-shock domain in complex with ucaucu | x-ray diffraction | A | — | — |
| 5YTX | Crystal structure of YB1 cold-shock domain in complex with ucaacu | x-ray diffraction | A | — | — |
| 6A6L | Crystal structure of the cold shock domain of yb-1 in complex with M5C RNA | x-ray diffraction | A | — | — |
| 6KTC | Crystal structure of YBX1 csd with M5C RNA | x-ray diffraction | A | — | — |
| 6KUG | Crystal structure of YBX1 csd with RNA | x-ray diffraction | A | — | — |
| 6LMR | Solution structure of cold shock domain and ssDNA complex | solution nmr | A | — | — |
| 6LMR | Solution structure of cold shock domain and ssdna complex | solution nmr | A | — | — |
| 6LMS | Solution NMR structure cold shock domain of YB1 from homo sapiens | solution nmr | A | — | — |
| P67809 | AlphaFold monomer V2.0 prediction for Y-box-binding protein 1 (P67809) | predicted | A | — | — |
Ligands
- SO4 · Sulfate ion · in 1 record
Experiment against prediction
- 5YTV chain A against the predicted model P67809: TM-score 0.94, RMSD 0.70 Å
- 5YTS chain A against the predicted model P67809: TM-score 0.94, RMSD 0.69 Å
- 5YTX chain A against the predicted model P67809: TM-score 0.94, RMSD 0.70 Å
- 6LMR chain A against the predicted model P67809: TM-score 0.94, RMSD 0.99 Å
- 6LMR chain A against the predicted model P67809: TM-score 0.94, RMSD 0.99 Å
- 6LMS chain A against the predicted model P67809: TM-score 0.94, RMSD 1.00 Å
- 6KTC chain A against the predicted model P67809: TM-score 0.94, RMSD 0.93 Å
- 6KUG chain A against the predicted model P67809: TM-score 0.94, RMSD 0.97 Å
- 6A6L chain A against the predicted model P67809: TM-score 0.93, RMSD 1.02 Å
Elsewhere
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