MolNFT v1 · #155904 · protein + DNA

Solution structure of cold shock domain and ssdna complex

6LMR · Y-box-binding protein 1: “Solution structure of cold shock domain and ssdna complex”. Solution nmr. MolNFT v1 #155904 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6LMR
Type: protein + DNA
Length: 97 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Y-box-binding protein 1; DNA (5'-D(P*AP*AP*CP*AP*CP*CP*T)-3')
UniProt: P67809

Structure

solution nmr · 2 distinct chains · 7% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Y-box-binding protein 1	protein	90	7% helix, 44% strand	P67809
B	DNA (5'-D(PAPAPCPAPCPCP*T)-3')	dna	7	—	—

Interfaces

1 interface between chains.

A–B · 788 Å² buried · 12 hydrogen bonds · protein-nucleic

Compared structures

6LMR · Solution structure of cold shock domain and ssDNA complex · the same entry in another collection · chain A against A, TM-score 1.00
P67809 · AlphaFold monomer V2.0 prediction for Y-box-binding protein 1 (P67809) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P67809
Elsewhere: RCSB PDB 6LMR · PDBe 6LMR · UniProt P67809

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