Research workbench
Pyridoxal kinase from leishmania donovani in complex with ADP and pyridoxamine
Analyse Pyridoxal kinase from leishmania donovani in complex with ADP and pyridoxamine in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6K90
- Type
- protein
- Length
- 582 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- E9BLM4
- Ligands
- PXM, ADP, CA, PO4, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 295 | — | E9BLM4 |
| B | — | protein | 287 | — | E9BLM4 |
Ligands and binding sites
- PXM · 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol · ligand · 2 copies · chains A, B
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B
- CA · Calcium ion · metal · 8 copies · chains A, B
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
- CL · Chloride ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6K90 · Pyridoxal Kinase from Leishmania donovani in complex with ADP and Pyridoxamine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E9BLM4
- Elsewhere: RCSB PDB 6K90 · PDBe 6K90 · UniProt E9BLM4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.