Research workbench
Crystal structure of the siderophore-interacting protein sips from aeromonas hydrophila
Analyse Crystal structure of the siderophore-interacting protein sips from aeromonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6K2L
- Type
- protein
- Length
- 472 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Siderophore-interacting protein
- UniProt
- A0A1V2F0S1
- Ligands
- FAD
- Pockets
- 5 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 23% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Siderophore-interacting protein | protein | 248 | 25% helix, 32% strand | A0A1V2F0S1 |
| B | Siderophore-interacting protein | protein | 224 | 21% helix, 35% strand | A0A1V2F0S1 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1103 | 0.80 | 0.81 | 115 | FAD |
| 2 | 451 | 0.74 | 0.83 | 50 | FAD |
| 3 | 92 | 0.36 | 0.75 | 22 | empty |
| 4 | 52 | 0.36 | 0.80 | 14 | empty |
| 5 | 84 | 0.35 | 0.75 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 429 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6K2L · Crystal structure of the Siderophore-interacting protein SipS from Aeromonas hydrophila · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1V2F0S1
- Elsewhere: RCSB PDB 6K2L · PDBe 6K2L · UniProt A0A1V2F0S1
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