Research workbench

Structure of membrane protein

Analyse Structure of membrane protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6K1H
Type: protein
Length: 1,560 residues
Chains: 6
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A0A387CW08, P69801
Ligands: MAN

Structure

electron microscopy · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
Z, F, C	—	protein	273	—	A0A387CW08
Y, E, B	—	protein	247	—	P69801

Ligands and binding sites

MAN · alpha-D-mannopyranose · sugar · 3 copies · chains Z, Y, F, E, C, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6K1H · Structure of membrane protein · the same entry in another collection · chain F against F, TM-score 1.00
P69801 · AlphaFold monomer V2.0 prediction for pts system mannose-specific eiic component (P69801) · a predicted model of the same protein · chain Y against A, TM-score 0.76

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A387CW08
Every structure of UniProt P69801
Elsewhere: RCSB PDB 6K1H · PDBe 6K1H · UniProt A0A387CW08 · UniProt P69801

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