Research workbench
Crystal structure of kibra and beta-dystroglycan
Analyse Crystal structure of kibra and beta-dystroglycan in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JJY
- Type
- protein
- Length
- 145 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein kibra; Peptide from dystroglycan
- UniProt
- Q5SXA9, Q14118
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein kibra | protein | 128 | 40% helix, 22% strand | Q5SXA9 |
| U | Peptide from dystroglycan | protein | 17 | 0% helix, 0% strand | Q14118 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, U
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–U · 792 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6JJY · Crystal Structure of KIBRA and beta-Dystroglycan · the same entry in another collection · chain A against A, TM-score 1.00
- Q5SXA9 · AlphaFold monomer V2.0 prediction for protein kibra (Q5SXA9) · a predicted model of the same protein · chain A against A, TM-score 0.49
- Q14118 · AlphaFold monomer V2.0 prediction for dystroglycan (Q14118) · a predicted model of the same protein · chain U against A, TM-score 0.28
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SXA9
- Every structure of UniProt Q14118
- Elsewhere: RCSB PDB 6JJY · PDBe 6JJY · UniProt Q5SXA9 · UniProt Q14118
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