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Crystal structure of apo pullulanase from paenibacillus barengoltzii in space group P212121

Analyse Crystal structure of apo pullulanase from paenibacillus barengoltzii in space… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6JHG
Type: protein
Length: 644 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pulullanase
EC: 3.2.1.41
UniProt: A0A0C5GWS2
Ligands: CA, CL
Pockets: 5 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pulullanase (EC 3.2.1.41)	protein	644	31% helix, 23% strand	A0A0C5GWS2

Ligands and binding sites

CA · Calcium ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	187	0.58	0.81	30	empty
2	232	0.54	0.77	33	empty
3	87	0.41	0.78	19	empty
4	94	0.38	0.76	20	empty
5	55	0.29	0.75	16	empty

Compared structures

6JHG · Crystal structure of apo Pullulanase from Paenibacillus barengoltzii in space group… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0C5GWS2
Elsewhere: RCSB PDB 6JHG · PDBe 6JHG · UniProt A0A0C5GWS2

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