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Crystal structure of proline racemase-like protein from thermococcus litoralis in complex with proline

Analyse Crystal structure of proline racemase-like protein from thermococcus litoralis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6J7C
Type: protein
Length: 331 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Proline racemase
UniProt: H3ZMH5
Ligands: PRO
Pockets: 1 · best druggability 0.28

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Proline racemase	protein	331	21% helix, 43% strand	H3ZMH5

Ligands and binding sites

PRO · Proline · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.28	0.75	16	empty

Compared structures

6J7C · Crystal structure of proline racemase-like protein from Thermococcus litoralis in complex… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt H3ZMH5
Elsewhere: RCSB PDB 6J7C · PDBe 6J7C · UniProt H3ZMH5

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