Research workbench
Se-met L45M programmed cell death 5 protein from sulfolobus solfataricus
Analyse Se-met L45M programmed cell death 5 protein from sulfolobus solfataricus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6IQO
- Type
- protein
- Length
- 201 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA-binding protein SSO0352
- UniProt
- Q980F8
Structure
x-ray diffraction · 2 distinct chains · 81% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-binding protein SSO0352 | protein | 101 | 80% helix, 2% strand | Q980F8 |
| B | DNA-binding protein SSO0352 | protein | 100 | 82% helix, 2% strand | Q980F8 |
Ligands and binding sites
- 2PE · Nonaethylene glycol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 486 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 6IQO · Se-Met L45M Programmed Cell Death 5 protein from Sulfolobus solfataricus · the same entry in another collection · chain A against A, TM-score 1.00
- Q980F8 · AlphaFold monomer V2.0 prediction for DNA-binding protein SSO0352 (Q980F8) · a predicted model of the same protein · chain A against A, TM-score 0.76
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q980F8
- Elsewhere: RCSB PDB 6IQO · PDBe 6IQO · UniProt Q980F8
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