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A complex structure of H25A mutant of glycosyltransferase with udp
Analyse A complex structure of H25A mutant of glycosyltransferase with udp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ING
- Type
- protein
- Length
- 442 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Udp-glycosyltransferase 76G1
- EC
- 2.4.1.-
- UniProt
- Q6VAB4
- Ligands
- UDP
- Pockets
- 4 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-glycosyltransferase 76G1 (EC 2.4.1.-) | protein | 442 | 45% helix, 16% strand | Q6VAB4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1028 | 0.81 | 0.82 | 80 | UDP, GOL |
| 2 | 97 | 0.36 | 0.74 | 17 | GOL |
| 3 | 52 | 0.28 | 0.74 | 12 | empty |
| 4 | 55 | 0.27 | 0.74 | 16 | empty |
Compared structures
- 6ING · A complex structure of H25A mutant of glycosyltransferase with UDP · the same entry in another collection · chain A against A, TM-score 1.00
- Q6VAB4 · AlphaFold monomer V2.0 prediction for udp-glycosyltransferase 76G1 (Q6VAB4) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6VAB4
- Elsewhere: RCSB PDB 6ING · PDBe 6ING · UniProt Q6VAB4
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