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Crystal structure of H5N2 hemagglutinin G228S Q226L mutant with 3SLN from A/CHICKEN/TAIWAN/0502/2012

Analyse Crystal structure of H5N2 hemagglutinin G228S Q226L mutant with 3SLN from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6IN5
Type: protein
Length: 495 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hemagglutinin
Ligands: GAL, SIA
Pockets: 2 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hemagglutinin	protein	495	24% helix, 30% strand	—

Ligands and binding sites

GAL · beta-D-galactopyranose · sugar
SIA · N-acetyl-alpha-neuraminic acid · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	257	0.55	0.77	41	empty
2	83	0.30	0.72	16	empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

6IN5 · Crystal structure of H5N2 hemagglutinin G228S Q226L mutant with 3SLN from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6IN5 · PDBe 6IN5

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